Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.
MATCH PARCELS TO TEMPLATE BY NAME
wb_command -cifti-create-parcellated-from-template
<cifti-template> - a cifti file with the template parcel mapping along
column
<modify-direction> - which dimension of the output file should match the
template (integer, 'ROW', or 'COLUMN')
<cifti-out> - output - the output cifti file
[-fill-value] - specify value to be used in parcels that don't match
<value> - value to use (default 0)
[-cifti] - repeatable - specify an input cifti file
<cifti-in> - the input parcellated cifti file
For each parcel name in the template mapping, find that name in an input
cifti file and use its data in the output file. All input cifti files
must have a parcels mapping along <modify-direction> and matching
mappings along other dimensions. The direction can be either an integer
starting from 1, or the strings 'ROW' or 'COLUMN'.