Using Workbench Command

Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.

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ESTIMATE FIBER ORIENTATION DISTRIBUTIONS FROM BEDPOSTX SAMPLES
   wb_command -estimate-fiber-binghams
      <merged_f1samples> - fiber 1 strength samples
      <merged_th1samples> - fiber 1 theta samples
      <merged_ph1samples> - fiber 1 phi samples
      <merged_f2samples> - fiber 2 strength samples
      <merged_th2samples> - fiber 2 theta samples
      <merged_ph2samples> - fiber 2 phi samples
      <merged_f3samples> - fiber 3 strength samples
      <merged_th3samples> - fiber 3 theta samples
      <merged_ph3samples> - fiber 3 phi samples
      <label-volume> - volume of cifti structure labels
      <cifti-out> - output - output cifti fiber distributons file

      This command does an estimation of a bingham distribution for each fiber
      orientation in each voxel which is labeled a structure identifier.  These
      labelings come from the <label-volume> argument, which must have labels
      that match the following strings:

      CORTEX_LEFT
      CORTEX_RIGHT
      CEREBELLUM
      ACCUMBENS_LEFT
      ACCUMBENS_RIGHT
      ALL_GREY_MATTER
      ALL_WHITE_MATTER
      AMYGDALA_LEFT
      AMYGDALA_RIGHT
      BRAIN_STEM
      CAUDATE_LEFT
      CAUDATE_RIGHT
      CEREBELLAR_WHITE_MATTER_LEFT
      CEREBELLAR_WHITE_MATTER_RIGHT
      CEREBELLUM_LEFT
      CEREBELLUM_RIGHT
      CEREBRAL_WHITE_MATTER_LEFT
      CEREBRAL_WHITE_MATTER_RIGHT
      CORTEX
      DIENCEPHALON_VENTRAL_LEFT
      DIENCEPHALON_VENTRAL_RIGHT
      HIPPOCAMPUS_LEFT
      HIPPOCAMPUS_RIGHT
      INVALID
      OTHER
      OTHER_GREY_MATTER
      OTHER_WHITE_MATTER
      PALLIDUM_LEFT
      PALLIDUM_RIGHT
      PUTAMEN_LEFT
      PUTAMEN_RIGHT
      THALAMUS_LEFT
      THALAMUS_RIGHT