Using Workbench Command

Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.

Full Documentation:

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MODIFY COORDINATES OF A SURFACE
   wb_command -surface-set-coordinates
      <surface-in> - the surface to use for the topology
      <coord-metric> - the new coordinates, as a 3-column metric file
      <surface-out> - output - the new surface

      Takes the topology from an existing surface file, and uses values from a
      metric file as coordinates to construct a new surface file.

      See -surface-coordinates-to-metric for how to get surface coordinates as
      a metric file, such that you can then modify them via metric commands,
      etc.